人DMP1结构及功能的生物信息学分析
Bioinformatic analysis of the structure and function of human DMP1
  
DOI:10.3969/j.issn.1006.7108.2019.09.012
中文关键词:  DMP1  生物信息学  结构  功能
英文关键词:DMP1  bioinformatics  structure  function
基金项目:山西省卫生计生委科研课题(201602024);长治医学院科技创新团队项目(CX201413);长治医学院大学生创新创业训练计划项目(D2017002)
作者单位
黄燕1 裴晋红1 李钰娜1 栗学清1 武翠玲1 郑军1 王博 宋丽华2* 1.长治医学院基础医学部生物化学教研室山西 长治 046000 2.长治医学院药学系山西 长治 046000 
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中文摘要:
      目的 预测分析人DMP1的结构与功能,为进一步探讨DMP1作用机制提供借鉴。方法 生物信息学方法分析DMP1蛋白的理化性质、亚细胞定位、跨膜区和信号肽、二级结构、三级结构,潜在磷酸化及糖基化位点、蛋白相互作用网络、5’非翻译区潜在转录因子结合位点和DMP1分子的进化保守性等指标。结果 人DMP1蛋白是酸性亲水蛋白;信号肽切割位点位于第16与17位氨基酸之间,无跨膜区;主要二级结构形式为无规卷曲;磷酸化位点123个,O-糖基化位点118个、N-糖基化位点8个;DMP1具有利于蛋白间相互作用的结构特点,5’非翻译区存在多种转录因子潜在结合位点,人体各类组织均有表达,且具有在多种亚细胞结构中定位的特征。结论 疏松的结构特征、表达的广泛性、丰富的修饰位点及多种转录因子结合位点均提示DMP1具有更为复杂的生物学功能。
英文摘要:
      Objective To analyze the structure and function of human dentin matrix protein 1 (DMP1), in order to provide reference for further study on the mechanism of DMP1. Methods The physicochemical properties, subcellular structural localization, transmembrane region and signal peptide, secondary structure, tertiary structure, potential phosphorylation and glycosylation sites, protein interaction networks, the potential transcricption factor binding sites in the 5’ UTR, and the evolutionary conservation of the DMP1 protein were analyzed using bioinformatics methods. Results Human DMP1 is an acidic hydrophilic protein. The signal peptide cleavage site is between 16 and 17 amino acid residues, and there is no transmembrane region. The main secondary structural element is random coil. There are 123 phosphorylation sites,118 O-glycosylation site and 8 N-glycosylation sites. DMP1 has structural features that facilitate protein-protein interactions, and there are multiple transcription factor possible binding sites in the 5’ UTR. Meanwhile, it is expressed in all tissues of human body, and it has the localization characteristics of subcellular structures. Conclusion The loose structure, extensive expression, abundant modification sites, and many transcription factor binding sites suggest that DMP1 has more complex biological functions.
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